Holden, a young man who wakes up from a coma after 12 years, discovers new abilities that propel him into the middle of a dangerous conspiracy. Now Holden must try and figure out what happened to him during those 12 years, how to survive a world that changed while he was gone, and answer the question, why did this happen to him?
With his mission in the Realm seemingly behind him, Holden throws himself into his new "normal" life, working a regular job and furthering his relationship with Willa, but he can't shake the feeling that something is coming. Meanwhile, Diane is asked to make a huge sacrifice to further the investigation into Hollow Sky, one that doesn't sit well with Tom, and Charlie reappears hiding a secret, and acting on orders from Yellow Jacket.
Willa shows up unexpectedly at the Matthews house for an uncomfortable "meet the family" dinner. Willa struggles with trying to convince Arthur to let go of the Realm, while she and Holden try to navigate their relationship. Meanwhile, Charlie learns some surprising secrets during an unauthorized house call –at Yellow Jacket's request.
Holden continues to be plagued by disturbing nightmares and finds it harder to control his powers at work. Luke finds himself in danger of falling back into a bad habit, while Jeff is furious when he learns Pastor Ian and Helping Hands are trying to get close to Christine. A mysterious coma patient in Argentina named Diego awakens a changed man.
Holden confides in Luke about his recent struggles, leading Luke to again question why Holden is not embracing his powers to make things better. Willa is frantic when Arthur goes missing, while Jeff faces some uncomfortable questions from someone looking into Hollow Sky. Diane tries to glean info from Ian, and Tom struggles with how to help Holden. Meanwhile, Charlie has a surprising run in, while Yellow Jacket pays a visit to an old friend.
Luke discovers Holden sleepwalking, and helps him unearth a new clue into what is happening with the Realm. Willa steps in to help Luke with a difficult situation. Charlie is given the opportunity to get what she's been seeking, while Shoemacher continues to recruit followers into Hollow Sky. Meanwhile, Charlie and Holden have a strange reunion, and Diego makes his way towards Ft. Reed – and Holden.
Holden turns to Charlie for help in understanding what is happening with him and the Realm – but she is reluctant to share why she's back in Ft. Reed. Jeff digs up info on the mysterious Edgar and what his connection to Holden might be. Diane and Tom feel pressured to learn more about Pastor Ian. Meanwhile, Willa and Holden realize they need to work on their communication.
Holden and Jeff step up their efforts to learn about Edgar Abbott, and uncover more than they bargained for. Willa turns to Luke for help in understanding what's going on with Holden – leaving Luke conflicted. Charlie begins to comprehend the danger Diego presents, and has a tense confrontation with a surprising foe. Meanwhile, Diane and Tom struggle with how to continue their work for Agent Borden. And as part of his new role at Hollow Sky, Yellow Jacket pays a visit to Pastor Ian.
Holden launches a risky plan with assistance from Jeff and Charlie. Luke makes a move to end Hollow Sky's threat to the Matthews family. Shoemacher uncovers a horrifying scene at Hollow Sky and disagrees with Yellow Jacket about the future of the organization. Pastor Ian makes a desperate plea to Diane, who implores him to do the right thing, while Tom has an unsettling encounter with Diego regarding Holden.
Faced with a frightening threat from the Realm, Holden attempts to fix what is broken – getting assistance from an unexpected source. Luke and Willa make a horrifying discovery that has further ramifications than even they understand. Tom and Diane are stunned to realize the depth of what is going on with Holden. And Willa and Luke come face to face with Yellow Jacket.
Diego launches his latest attack against Holden that hits close to the Matthews home. Holden and Charlie are left to try and explain what is happening to a frantic and confused Tom and Diane.Agent Borden furthers her plan to take down Hollow Sky. Luke and Willa have a long overdue conversation and take drastic steps while teaming up with a surprising ally.